Publications

June - August, 2011

Atamna-Ismaeel, N, OM Finkel, F Glaser, I Sharon, R Schneider, AF Post, JL Spudich, C von Mering, JA Vorholt, D Iluz, O Béjà and S Belkin. (2011). Microbial rhodopsins on leaf surfaces of terrestrial plants. Environmental Microbiology. In Press, Corrected Proof. doi: 10.1111/j.1462-2920.2011.02554.x.

Bordenstein, SR, C Brothers, G Wolfe, M Bahr, RL Minckley, ME Clark, JJ Wernegreen, SR Bordenstein, WS Reznikoff and JH Werren. (2010). Using the Wolbachia Bacterial Symbiont to Teach Inquiry-Based Science: A High School Laboratory Series. American Biology Teacher. 72: 478-483.

Chen, L, Z Zhang, Z Li, J Tang, P Caldwell and W Zhang. (2011). Biophysical control of whole tree transpiration under an urban environment in Northern China. Journal of Hydrology. 402: 388-400.

DeMay, BS, X Bai, L Howard, P Occhipinti, RA Meseroll, ET Spiliotis, R Oldenbourg and AS Gladfelter. (2011). Septin filaments exhibit a dynamic, paired organization that is conserved from yeast to mammals. The Journal of Cell Biology. 193: 1065-1081.

Field, CM, M Wühr, GA Anderson, HY Kueh, D Strickland and TJ Mitchison. (2011). Actin behavior in bulk cytoplasm is cell cycle regulated in early vertebrate embryos. Journal of Cell Science. 124: 2086-2095.

Field, D, L Amaral-Zettler, G Cochrane, JR Cole, P Dawyndt, GM Garrity, J Gilbert, FO Gloeckner, L Hirschman, I Karsch-Mizrachi, H Klenk, R Knight, R Kottmann, N Kyrpides, F Meyer, I San Gil, S Sansone, LM Schriml, P Sterk, T Tatusova, DW Ussery, O White and J Wooley. (2011). The Genomic Standards Consortium. PLoS Biology. 9: e1001088. doi: 10.1371/journal.pbio.1001088.

Forbrich, I, L Kutzbach, C Wille, T Becker, J Wu and M Wilmking. (2011). Cross-evaluation of measurements of peatland methane emissions on microform and ecosystem scales using high-resolution landcover classification and source weight modelling. Agricultural and Forest Meteorology. 151: 864-874.

Forger, DB, D Paydarfar and JR Clay. (2011). Optimal Stimulus Shapes for Neuronal Excitation. PLoS Computational Biology. 7: e1002089. doi: 10.1371/journal.pcbi.1002089.

Fussell, KC, RG Udasin, PJS Smith, MA Gallo and JD Laskin. (2011). Catechol metabolites of endogenous estrogens induce redox cycling and generate reactive oxygen species in breast epithelial cells. Carcinogenesis. In Press, Accepted Article. doi: 10.1093/carcin/bgr109.

Galford, GL, JM Melillo, DW Kicklighter, JF Mustard, TW Cronin, CEP Cerri and CC Cerri. (2011). Historical carbon emissions and uptake from the agricultural frontier of the Brazilian Amazon. Ecological Applications. 21: 750-763.

Gladyshev, EA and IR Arkhipova. (2011). A widespread class of reverse transcriptase-related cellular genes. Proceedings of the National Academy of Sciences. In Press, Corrected Proof. doi: 10.1073/pnas.1100266108.

Gooseff, MN, DA Benson, MA Briggs, M Weaver, W Wollheim, B Peterson and CS Hopkinson. (2011). Residence time distributions in surface transient storage zones in streams: Estimation via signal deconvolution. Water Resources Research. 47: W05509. doi: 10.1029/2010WR009959.

Gray, JP, T Eisen, GW Cline, PJS Smith and E Heart. (2011). Plasma membrane electron transport in pancreatic B-cells is mediated in part by NQO1. American Journal of Physiology - Endocrinology and Metabolism. 301: E113-E121.

Harmon, ME, B Bond-Lamberty, J Tang and R Vargas. (2011). Heterotrophic respiration in disturbed forests: A review with examples from North America. Journal of Geophysical Research-Biogeosciences. 116: G00K04. doi: 10.1029/2010JG001495.

Helton, AM, GC Poole, JL Meyer, WM Wollheim, BJ Peterson, PJ Mulholland, ES Bernhardt, JA Stanford, C Arango, LR Ashkenas, LW Cooper, WK Dodds, SV Gregory, RO Hall Jr., SK Hamilton, SL Johnson, WH McDowell, JD Potter, JL Tank, SM Thomas, HM Valett, JR Webster and L Zeglin. (2011). Thinking outside the channel: modeling nitrogen cycling in networked river ecosystems. Frontiers in Ecology and the Environment. 9: 229-238.

Kanaan, NM, G Morfini, G Pigino, NE LaPointe, A Andreadis, Y Song, E Leitman, LI Binder and ST Brady. Phosphorylation in the amino terminus of tau prevents inhibition of anterograde axonal transport. Neurobiology of Aging. In Press, Corrected Proof. doi: 10.1016/j.neurobiolaging.2011.06.006.

Kanaan, NM, GA Morfini, NE LaPointe, GF Pigino, KR Patterson, Y Song, A Andreadis, Y Fu, ST Brady and LI Binder. (2011). Pathogenic Forms of Tau Inhibit Kinesin-Dependent Axonal Transport through a Mechanism Involving Activation of Axonal Phosphotransferases. The Journal of Neuroscience. 31: 9858-9868.

Kinney, EL and I Valiela. (2011). Nitrogen Loading to Great South Bay: Land Use, Sources, Retention, and Transport from Land to Bay. Journal of Coastal Research. 27: 672-686.

Liebeskind, BJ, DM Hillis and HH Zakon. (2011). Evolution of sodium channels predates the origin of nervous systems in animals. Proceedings of the National Academy of Sciences of the United States of America. 108: 9154-9159.

Lienau, EK, R DeSalle, M Allard, EW Brown, D Swofford, JA Rosenfeld, IN Sarkar and PJ Planet. (2011). The mega-matrix tree of life: using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life. Cladistics. 27: 417-427.

Mack, MC, MS Bret-Harte, TN Hollingsworth, RR Jandt, EAG Schuur, GR Shaver and DL Verbyla. (2011). Carbon loss from an unprecedented Arctic tundra wildfire. Nature. 475: 489-492.

Martinetto P, M Teichberg I Valiela, D Montemayor and O Iribarne. (2011). Top-down and bottom-up regulation in a high nutrient–high herbivory coastal ecosystem. Marine Ecology Progress Series. 432: 69-82.

Melillo, JM, S Butler, J Johnson, J Mohan, P Steudler, H Lux, E Burrows, F Bowles, R Smith, L Scott, C Vario, T Hill, A Burton, Y Zhou and J Tang. (2011). Soil warming, carbon–nitrogen interactions, and forest carbon budgets. Proceedings of the National Academy of Sciences. In Press, Accepted Manuscript. doi: 10.1073/pnas.1018189108.

Messerli, MA and DM Graham. (2011). Extracellular Electrical Fields Direct Wound Healing and Regeneration. The Biological Bulletin. 221: 79-92.

Moran, XAG, HW Ducklow and M Erickson. (2011). Single-cell physiological structure and growth rates of heterotrophic bacteria in a temperate estuary (Waquoit Bay, Massachusetts). Limnology and Oceanography. 56: 37-48.

Nomura, M, T Nagai, Y Harada and T Tani. (2011). Facilitated Intracellular Transport of TrkA by an Interaction with Nerve Growth Factor. Developmental Neurobiology. 71: 634-649.

Oleksiak, MF, SI Karchner, MJ Jenny, DG Franks, DBM Welch and ME Hahn. (2011). Transcriptomic assessment of resistance to effects of an aryl hydrocarbon receptor (AHR) agonist in embryos of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site. BMC Genomics. 12: 263.

Pollard, PC and H Ducklow. (2011). Ultrahigh bacterial production in a eutrophic subtropical Australian river: Does viral lysis short-circuit the microbial loop? Limnology and Oceanography. 56: 1115-1129.

Pulido, C, G Malagon, C Ferrer, J Kuichen, M Del Pilar Gomez and E Nasi. (2011). Unusual Permeation and Blockage Properties of the Light-Sensitive Conductance of Amphioxus Photoreceptors. Journal of General Physiology. 138: 9A-10A.

Qian, H and H Ripps. (2011). Neurovascular Interaction and the Pathophysiology of Diabetic Retinopathy. Experimental Diabetes Research. 693426. doi: 10.1155/2011/693426.

Rocha, AV and GR Shaver. (2011). Postfire energy exchange in arctic tundra: the importance and climatic implications of burn severity. Global Change Biology. 17: 2831-2841.

Rodrigues, JLM, MH Serres and JM Tiedje. (2011). Large scale comparative phenotypic and genomic analyses reveal ecological preferences of Shewanella species and identify metabolic pathways conserved at genus level. Applied and Environmental Microbiology. Accepted Manuscript, In Press. doi: 10.1128/AEM.00097-11.

Rosauer, DR, PR Biga, SR Lindell, FP Binkowski, BS Shepherd, DE Palmquist, CA Simchick and FW Goetz. (2011). Development of yellow perch (Perca flavescens) broodstocks: Initial characterization of growth and quality traits following grow-out of different stocks. Aquaculture. 317: 58-66.

Tian, H, X Xu, C Lu, M Liu, W Ren, G Chen, J Melillo and J Liu. (2011). Net exchanges of CO2, CH4, and N2O between China's terrestrial ecosystems and the atmosphere and their contributions to global climate warming. Journal of Geophysical Research-Biogeosciences. 116: G02011. doi: 10.1029/2010JG001393.

Wang, W, L Liu, X Song, Y Mo, C Komma, HD Bellamy, ZJ Zhao and GW Zhou. (2011). Crystal Structure of Human Protein Tyrosine Phosphatase SHP-1 in the Open Conformation. Journal of Cellular Biochemistry. 112: 2062-2071.

Weaver, L, S Ems-McClung, J Stout, C LeBlanc, S Shaw, M Gardner and C Walczak. Kif18A Uses a Microtubule Binding Site in the Tail for Plus-End Localization and Spindle Length Regulation. Current Biology. In Press, Corrected Proof. doi: 10.1016/j.cub.2011.08.005.

Webb, SE, CCY Cheung, CM Chan, DR Love and AL Miller. (2011). The application of complementary luminescent and fluorescent imaging techniques to visualize nuclear and cytoplasmic Ca2+-signalling during the in vivo differentiation of slow muscle cells in zebrafish embryos under normal and dystrophic conditions. Clinical and Experimental Pharmacology and Physiology. In Press. doi: 10.1111/j.1440-1681.2011.05582.x.

Zhang, J, SE Webb, LH Ma, CM Chan and AL Miller. (2011). Necessary role for intracellular Ca2+ transients in initiating the apical-basolateral thinning of enveloping layer cells during the early blastula period of zebrafish development. Development Growth & Differentiation. 53: 679-696.

Zhou, Y, J Tang, JM Melillo, S Butler and JE Mohan. (2011). Root standing crop and chemistry after six years of soil warming in a temperate forest. Tree Physiology. In Press. doi: 10.1093/treephys/tpr066.