Publications

December, 2011 - February 2012

Alavian, KN, SI Dworetzky, L Bonanni, P Zhang, S Sacchetti, MA Mariggio, M Onofrj, A Thomas, H Li, JE Mangold, AP Signore, U DeMarco, DR Demady, P Nabili, E Lazrove, PJS Smith, VK Gribkoff and EA Jonas. Effects of dexpramipexole on brain mitochondrial conductances and cellular bioenergetic efficiency. Brain Research. In Press.

Alliegro, MC, S Hartson and MA Alliegro. 2012. Composition and Dynamics of the Nucleolinus, a Link between the Nucleolus and Cell Division Apparatus in Surf Clam Spisula Oocytes. Journal of Biological Chemistry. 287: 6702-6713.

Bjerke, JW, S Bokhorst, M Zielke, TV Callaghan, FW Bowles and GK Phoenix. 2011. Contrasting sensitivity to extreme winter warming events of dominant sub-Arctic heathland bryophyte and lichen species. Journal of Ecology. 99: 1481-1488.

Bland, ND, C Wang, C Tallman, AE Gustafson, Z Wang, TD Ashton, SO Ochiana, G McAllister, K Cotter, AP Fang, L Gechijian, N Garceau, R Gangurde, R Ortenberg, MJ Ondrechen, RK Campbell and MP Pollastri. 2011. Pharmacological Validation of Trypanosoma brucei Phosphodiesterases B1 and B2 as Druggable Targets for African Sleeping Sickness. Journal of Medicinal Chemistry. 54: 8188-8194.

Calvert, MEK, GD Wright, FY Leong, K Chiam, Y Chen, G Jedd and MK Balasubramanian. 2011. Myosin concentration underlies cell size-dependent scalability of actomyosin ring constriction. Journal of Cell Biology. 195: 799-813.

Cao, S, G Sun, Z Zhang, L Chen, Q Feng, B Fu, S McNulty, D Shankman, J Tang, Y Wang and X Wei. 2011. Greening China Naturally. Ambio. 40: 828-831.

Chiao, C and RT Hanlon. 2011. Visual Perception and Camouflage Body Patterning in Cuttlefish. Journal of Shellfish Research. 30: 998-998.

DeGiorgis, JA, KR Cavaliere and JPH Burbach. 2011. Identification of Molecular Motors in the Woods Hole Squid, Loligo pealei: An Expressed Sequence Tag Approach. Cytoskeleton. 68: 566-577.

DeMay, BS, N Noda, AS Gladfelter and R Oldenbourg. 2011. Rapid and Quantitative Imaging of Excitation Polarized Fluorescence Reveals Ordered Septin Dynamics in Live Yeast. Biophysical Journal. 101: 985-994.

Elmendorf,SC, GHR Henry, RD Hollister, RG Bjork, AD Bjorkman, TV Callaghan, LS Collier, EJ Cooper, JHC Cornelissen, TA Day, AM Fosaa, WA Gould, J Gretarsdottir, J Harte, L Hermanutz, DS Hik, A Hofgaard, F Jarrad, IS Jonsdottir, F Keuper, K Klanderud, JA Klein, S Koh, G Kudo, SI Lang, V Loewen, JL May, J Mercado, A Michelsen, U Molau, IH Myers-Smith, SF Oberbauer, S Pieper, E Post, C Rixen, CH Robinson, NM Schmidt, GR Shaver, A Stenstrom, A Tolvanen, O Totland, T Troxler, C Wahren, PJ Webber, JM Welker and PA Wookey. 2012. Global assessment of experimental climate warming on tundra vegetation: heterogeneity over space and time. Ecology Letters. 15: 164-175.

Fay, R. 2012. Listening in noise. Advances in Experimental Medicine and Biology. 730: 129-134.

Finkel, OM, AY Burch, SE Lindow, AF Post and S Belkin. 2011. Geographical Location Determines the Population Structure in Phyllosphere Microbial Communities of a Salt-Excreting Desert Tree. Applied and Environmental Microbiology. 77: 7647-7655.

Gadsby, DC, F Bezanilla, RF Rakowski, P De Weer and M Holmgren. 2012. The dynamic relationships between the three events that release individual Na+ ions from the Na+/K+-ATPase. Nat Commun. 3: 669.

Galvan, K, JW Fleeger, B Peterson, D Drake, LA Deegan and DS Johnson. 2011. Natural abundance stable isotopes and dual isotope tracer additions help to resolve resources supporting a saltmarsh food web. Journal of Experimental Marine Biology and Ecology. 410: 1-11.

Garbuz,DG, LN Astakhova, OG Zatsepina, IR Arkhipova, E Nudler and MB Evgen'ev. 2011. Functional Organization of hsp70 Cluster in Camel Camelus dromedarius and Other Mammals. PLoS One. 6: e27205.

Germer,S, A Zimmermann, C Neill, AV Krusche and H Elsenbeer. 2012. Disproportionate single-species contribution to canopy-soil nutrient flux in an Amazonian rainforest. Forest Ecology and Management. 267: 40-49.

Gibaud, T, E Barry, MJ Zakhary, M Henglin, A Ward, Y Yang, C Berciu, R Oldenbourg, MF Hagan, D Nicastro, RB Meyer and Z Dogic. 2012. Reconfigurable self-assembly through chiral control of interfacial tension. Nature. 481: 348-U127.

Goddard, A, N Wilson, P Cryer and G Yamashita. 2011. Data hosting infrastructure for primary biodiversity data. BMC Bioinformatics. 1: S5.

Graham, DM, MA Messerli and R Pethig. 2012. Spatial manipulation of cells and organelles using single electrode dielectrophoresis. BioTechniques. 52: 39-43.

Harwood, CL, IS Young, BA Tikunov, S Hollingworth, SM Baylor and LC Rome. 2011. Paying the piper: the cost of Ca2+ pumping during the mating call of toadfish. Journal of Physiology-London. 589: 5467-5484.

Hobbie, JE and EA Hobbie. 2012. Amino acid cycling in plankton and soil microbes studied with radioisotopes: measured amino acids in soil do not reflect bioavailability. Biogeochemistry. 107: 339-360.

Hárosi, FI and I Novales Flamarique. 2012. Functional significance of the taper of vertebrate cone photoreceptors. The Journal of General Physiology. 139: 159-187.

Johnson, DR, MJ Lara, GR Shaver, GO Batzli, JD Shaw and CE Tweedie. 2011. Exclusion of brown lemmings reduces vascular plant cover and biomass in Arctic coastal tundra: resampling of a 50+ year herbivore exclosure experiment near Barrow, Alaska. Environmental Research Letters. 6: 045507.

Liu, S, B Bond-Lamberty, JA Hicke, R Vargas, S Zhao, J Chen, SL Edburg, Y Hu, J Liu, AD McGuire, J Xiao, R Keane, W Yuan, J Tang, Y Luo, C Potter and J Oeding. 2011. Simulating the impacts of disturbances on forest carbon cycling in North America: Processes, data, models, and challenges. Journal of Geophysical Research-Biogeosciences. 116: G00K08.

Lougheed, VL, MG Butler, DC McEwen and JE Hobbie. 2011. Changes in Tundra Pond Limnology: Re-sampling Alaskan Ponds After 40 Years. Ambio. 40: 589-599.

Mackey, KRM, L Bristow, DR Parks, MA Altabet, AF Post and A Paytan. 2011. The influence of light on nitrogen cycling and the primary nitrite maximum in a seasonally stratified sea. Progress in Oceanography. 91: 545-560.

Manizza, M, MJ Follows, S Dutkiewicz, D Menemenlis, JW McClelland, CN Hill, BJ Peterson and RM Key. 2011. A model of the Arctic Ocean carbon cycle. Journal of Geophysical Research-Oceans. 116: C12020.

Mooney, T, R Hanlon, P Madsen, J Christensen-Dalsgaard, D Ketten and P Nachtigall. 2012. Potential for sound sensitivity in cephalopods. Advances in Experimental Medicine and Biology. 730: 125-128.

Ochiana, SO, A Gustafson, ND Bland, C Wang, MJ Russo, RK Campbell and MP Pollastri. Synthesis and evaluation of human phosphodiesterases PDE 5 inhibitor analogs as trypanosomal PDE inhibitors. 2. Tadalafil analogs. Bioorganic & Medicinal Chemistry Letters. In Press.

Oropeza, D and M Horb. 2011. Transient expression of Ngn3 in Xenopus endoderm promotes early and ectopic development of pancreatic beta and delta cells. Genesis. In Press.

Patterson, KR, SM Ward, B Combs, K Voss, NM Kanaan, G Morfini, ST Brady, TC Gamblin and LI Binder. 2011. Heat Shock Protein 70 Prevents both Tau Aggregation and the Inhibitory Effects of Preexisting Tau Aggregates on Fast Axonal Transport. Biochemistry. 50: 10300-10310.

Pearl, EJ, RM Grainger, M Guille and ME Horb. 2012. Development of Xenopus resource centers: The National Xenopus resource and the European Xenopus resource center. Genesis. In Press.

Pelini, SL, FP Bowles, AM Ellison, NJ Gotelli, NJ Sanders and RR Dunn. 2011. Heating up the forest: open-top chamber warming manipulation of arthropod communities at Harvard and Duke Forests. Methods in Ecology and Evolution. 2: 534-540.

Perry, DA, HG Morrison and RD Adam. 2011. Optical map of the genotype A1 WB C6 Giardia lamblia genome isolate. Molecular and Biochemical Parasitology. 180: 112-114.

Pulido, C, G Malagón, C Ferrer, JK Chen, JM Angueyra, E Nasi and MdP Gomez. 2012. The light-sensitive conductance of melanopsin-expressing Joseph and Hesse cells in amphioxus. The Journal of General Physiology. 139: 19-30.

Resing, JA, KH Rubin, RW Embley, JE Lupton, ET Baker, RP Dziak, T Baumberger, MD Lilley, JA Huber, TM Shank, DA Butterfield, DA Clague, NS Keller, SG Merle, NJ Buck, PJ Michael, A Soule, DW Caress, SL Walker, R Davis, JP Cowen, A Reysenbach and H Thomas. 2011. Active submarine eruption of boninite in the northeastern Lau Basin. Nature Geoscience. 4: 799-806.

Ross, WN. 2012 Understanding calcium waves and sparks in central neurons. Nature Reviews Neuroscience. In Press.

Sansone, S, P Rocca-Serra, D Field, E Maguire, C Taylor, O Hofmann, H Fang, S Neumann, W Tong, L Amaral-Zettler, K Begley, T Booth, L Bougueleret, G Burns, B Chapman, T Clark, L Coleman, J Copeland, S Das, A de Daruvar, P de Matos, I Dix, S Edmunds, CT Evelo, MJ Forster, P Gaudet, J Gilbert, C Goble, JL Griffin, D Jacob, J Kleinjans, L Harland, K Haug, H Hermjakob, SJH Sui, A Laederach, S Liang, S Marshall, A McGrath, E Merrill, D Reilly, M Roux, CE Shamu, CA Shang, C Steinbeck, A Trefethen, B Williams-Jones, K Wolstencroft, I Xenarios and W Hide. 2012. Toward interoperable bioscience data. Nature Genetics. 44: 121-126.

Scheffler, R, C Neill, AV Krusche and H Elsenbeer. 2011. Soil hydraulic response to land-use change associated with the recent soybean expansion at the Amazon agricultural frontier. Agriculture Ecosystems & Environment. 144: 281-289.

Shanklin, DR. 2012. On the pulmonary toxicity of oxygen. 4. The thyroid arena. Experimental and molecular pathology. 92: 140-154.

Sun, Y, Y Cai, SM Huse, R Knight, WG Farmerie, X Wang and V Mai. 2012. A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis. Briefings in Bioinformatics. 13: 107-121.

Toney, JL, S Theroux, RA Andersen, A Coleman, L Amaral-Zettler and Y Huang. 2012. Culturing of the first 37:4 predominant lacustrine haptophyte: Geochemical, biochemical, and genetic implications. Geochimica et Cosmochimica Acta. 78: 51-64.

van de Weg, MJ, P Meir, J Grace and G Damian Ramos. 2012. Photosynthetic parameters, dark respiration and leaf traits in the canopy of a Peruvian tropical montane cloud forest. Oecologia. 168: 23-34.

Wang, C, TD Ashton, A Gustafson, ND Bland, SO Ochiana, RK Campbell and MP Pollastri. Synthesis and evaluation of human phosphodiesterases PDE 5 inhibitor analogs as trypanosomal PDE inhibitors. 1. Sildenafil analogs. Bioorganic & Medicinal Chemistry Letters. In Press.

Webb, SE, RA Fluck and AL Miller. 2011. Calcium signaling during the early development of medaka and zebrafish. Biochimie. 93: 2112-2125.

Zeddies,DG, RR Fay, MD Gray, PW Alderks, A Acob and JA Sisneros. 2012. Local acoustic particle motion guides sound-source localization behavior in the plainfin midshipman fish, Porichthys notatus. The Journal of Experimental Biology. 215: 152-160.

Zhu, X, Q Zhuang, M Chen, A Sirin, J Melillo, D Kicklighter, A Sokolov and L Song. 2011. Rising methane emissions in response to climate change in Northern Eurasia during the 21st century. Environmental Research Letters. 6: 045211.

Zuchero, J. B, B Belin and R Dyche Mullins. 2012. Actin Binding to WH2 Domains Regulates Nuclear Import of the Multifunctional Actin Regulator JMY. Molecular Biology of the Cell. In Press. doi: 10.1091/mbc.E11-12-0992.