Publications

October 2009 - February 2010

Allen, JJ; Mathger, LM; Barbosa, A; Buresch, KC; Sogin, E; Schwartz, J; Chubb, C; Hanlon, RT. 2009. Cuttlefish dynamic camouflage: responses to substrate choice and integration of multiple visual cues. Proceedings of the Royal Society of London B. E-first. 10.1098/rspb.2009.1694

Alliegro, MC; Satir, P. 2009. Origin of the Cilium: Novel Approaches to Examine a Centriolar Evolution Hypothesis. Methods in Cell Biology. 94 Chap 2: 53-64.

Amaral-Zettler, LA; McCliment, EA; Ducklow, HW; Huse, SM. 2009. A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes. PLoS One. 4 (7): Art. No. e6372.

Auger, H; Sasakura, Y; Joly, JS; Jeffery, WR. 2010. Regeneration of oral siphon pigment organs in the ascidian Ciona intestinalis. Developmental Biology. E-first. 10.1016/j.ydbio.2009.12.040

Bokhorst, S; Bjerke, JW; Melillo, J; Callaghan, TV; Phoenix, GK. 2010. Impacts of extreme winter warming events on litter decomposition in a sub-Arctic heathland. Soil Biology & Biochemistry. E-first. 10.1016/j.soilbio.2009.12.011

Bonigk, W; Loogen, A; Seifert, R; Kashikar, N; Klemm, C; Krause, E; Hagen, V; Kremmer, E; Strunker, T; Kaupp, UB. 2009. An Atypical CNG Channel Activated by a Single cGMP Molecule Controls Sperm Chemotaxis. Science Signalling. 2 (94): ra68.

Brazelton, WJ; Ludwig, KA; Sogin, ML; Andreishcheva, EN; Kelley, DS; Shen, CC; Edwards, RL; Baross, JA. 2010. Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys. Proceedings of the National Academy of Sciences. 107 (4): 1612-1617.

Campioli, M; Street, LE; Michelsen, A; Shaver, GR; Maere, T; Samson, R; Lemeur, R. 2009. Determination of Leaf Area Index, Total Foliar N, and Normalized Difference Vegetation Index for Arctic Ecosystems Dominated by Cassiope tetragona. Arctic, Antarctic, and Alpine Research. 41 (4): 426-433.

Castro, P; Valiela, I; Freitas, H. 2009. Sediment pool and plant content as indicators of nitrogen regimes in Portuguese estuaries. Journal of Experimental Marine Biology and Ecology. 380 (1-2): 1-10.

Chaves, J; Neill, C; Germer, S; Neto, SG; Krusche, AV; Bonilla, AC; Elsenbeer, H. 2009. Nitrogen Transformations in Flowpaths Leading from Soils to Streams in Amazon Forest and Pasture. Ecosystems. 12 (6): 961-972.

Chiao, CC; Chubb, C; Buresch, KC; Barbosa, A; Allen, JJ; Mathger, LM; Hanlon, RT. 2010. Mottle camouflage patterns in cuttlefish: quantitative characterization and visual background stimuli that evoke them. Journal of Experimental Biology. 213 (2): 187-199.

Crump, BC; Peterson, BJ; Raymond, PA; Amon, RMW; Rinehart, A; McClelland, JW; Holmes, RM. 2009. Circumpolar synchrony in big river bacterioplankton. Proceedings of the National Academy of Sciences. 106 (50): 21208-21212.

Edds-Walton PL; Holstein GR; Fay RR. 2010. gamma-Aminobutyric acid is a neurotransmitter in the auditory pathway of toadfish, Opsanus tau. Hearing Research. E-first. 10.1016/j.heares.2010.01.008

Epristo MA; Chang L; Vale RD; Khan SM; Lipkow K. 2009. Introducing Simulated Cellular Architecture to the Quantitative Analysis of Fluorescent Microscopy. Progress in Biophysics and Molecular Biology. 100 (1-3): 25-32.

Fernandez-Busquets, X; Kornig, A; Bucior, I; Burger, MM; Anselmetti, D. 2009. Self-recognition and Ca2+-dependent Carbohydrate-carbohydrate Cell Adhesion Provide Clues to the Cambrian Explosion. Molecular Biology and Evolution. 26 (11): 2551-2561.

Germer, S; Neill, C; Krusche, AV; Elsenbeer, H. 2010. Influence of land-use change on near-surface hydrological processes: Undisturbed forest to pasture. Journal of Hydrology. 380 (3-4): 473-480.

Gilbert, JA; Field, D; Swift, P; Newbold, L; Oliver, A; Smyth, T; Somerfield, PJ; Huse, S; Joint, I. 2009. The seasonal structure of microbial communities in the Western English Channel. Environmental Microbiology. 11 (12): 3132-3139.

Gladyshev EA; Arkhipova IR. 2009. Rotifer rDNA-Specific R9 Retrotransposable Elements Generate an Exceptionally Long Target Site Duplication upon Insertion. Gene. 448 (2): 145-150.

Govoni, JJ; Hare, JA; Davenport, ED; Chen, MH; Marancik, KE. 2009. Mesoscale, cyclonic eddies as larval fish habitat along the southeast United States shelf: a Lagrangian description of the zooplankton community. ICES Journal of Marine Science. E-first. 10.1093/icesjms/fsp269

Greenan G; Brangwynne CP; Jaensch S; Gharakhani J; Jülicher F; Hyman AA. 2010. Centrosome Size Sets Mitotic Spindle Length in Caenorhabditis elegans Embryos. Current Biology. E-first. 10.1016/j.cub.2009.12.050

Guay, CKH; Zhulidov, AV; Robarts, RD; Zhulidov, DA; Gurtovaya, TU; Holmes, RM; Headley, JV. 2010. Measurements of Cd, Cu, Pb and Zn in the lower reaches of major Eurasian arctic rivers using trace metal clean techniques. Environmental Pollution. 158 (2): 624-630.

Hasagawa, Y; Hobbie, JE. 2010. Application of molecular knowledge of microbes to studies of ecological processes: Why the integration is so challenging. Bulletin of the Ecological Society of America. 91 (1): 68-79.

Herron, PM; Gage, DJ; Cardon, ZG. 2010. Micro-scale water potential gradients visualized in soil around plant root tips using microbiosensors. Plant Cell and Environment. 33 (2): 199-210.

Izumi, M; Sweeney, AM; DeMartini, D; Weaver, JC; Powers, ML; Tao, A; Silvas, TV; Kramer, RM; Crookes-Goodson, WJ; Mathger, LM; Naik, RR; Hanlon, RT; Morse, DE. 2010. Changes in reflectin protein phosphorylation are associated with dynamic iridescence in squid. Journal of the Royal Society Interface. 7 (44): 549-560.

Jain, A; Yang, XJ; Kheshgi, H; McGuire, AD; Post, W; Kicklighter, D. 2009. Nitrogen attenuation of terrestrial carbon cycle response to global environmental factors. Global Biogeochemical Cycles. 23: Art. No. GB4028.

Kajiwara, Y; Buxbaum, JD; Grice, DE. 2009. SLITRK1 Binds 14-3-3 and Regulates Neurite Outgrowth in a Phosphorylation-Dependent Manner. Biological Psychiatry. 66 (10): 918-925.

Kasinathan, RS; Goronga, T; Messerli, SM; Webb, TR; Greenberg, RM. 2010. Modulation of a Schistosoma mansoni multidrug transporter by the antischistosomal drug praziquantel. FASEB Journal. 24 (1): 128-135.

Kniffin, M; Neill, C; McHorney, R; Gregory, G. 2009. Nutrient Limitation of Periphyton and Phytoplankton in Cape Cod Coastal Plain Ponds. Northeastern Naturalist. 16 (3): 395-408.

Koop-Jakobsen, K; Giblin, AE. 2009. New approach for measuring denitrification in the rhizosphere of vegetated marsh sediments. Limnology and Oceanography: Methods. 7: 626-637.

Koop-Jakobsen, K; Giblin, AE. 2010. The effect of increased nitrate loading on nitrate reduction via denitrification and DNRA in salt marsh sediments. Limnology and Oceanography. 55 (2): 789-802.

Lasek-Nesselquist, E; Welch, DM; Thompson, RCA; Steuart, RF; Sogin, ML. 2009. Genetic Exchange Within and Between Assemblages of Giardia duodenalis. Journal of Eukaryotic Microbiology. 56 (6): 504-518.

Lazarevic, V; Whiteson, K; Huse, S; Hernandez, D; Farinelli, L; Osteras, M; Schrenzel, J; Francois, P. 2009. Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. Journal of Microbiological Methods. 79 (3): 266-271.

Lu, Y; Zhuang, Q; Zhou, G; Sirin, A; Melillo, J; Kicklighter, D. 2009. Possible decline of the carbon sink in the Mongolian Plateau during the 21st century. Environmental Research Letters. 4 (4): Art. No. 045023.

MacIntyre, S; Fram, JP; Kushner, PJ; Bettez, ND; O'Brien, WJ; Hobbie, JE; Kling, GW. 2009. Climate-related variations in mixing dynamics in an Alaskan arctic lake. Limnology and Oceanography. 54 (6): 2401-2417.

Manizza, M; Follows, MJ; Dutkiewicz, S; McClelland, JW; Menemenlis, D; Hill, CN; Townsend-Small, A; Peterson, BJ. 2009. Modeling transport and fate of riverine dissolved organic carbon in the Arctic Ocean. Global Biogeochemical Cycles. 23: Art. No. GB4006.

Melillo, JM; Reilly, JM; Kicklighter, DW; Gurgel, AC; Cronin, TW; Paltsev, S; Felzer, BS; Wang, X; Sokolov, AP; Schlosser, CA. 2009. Indirect Emissions from Biofuels: How Important?. Science. 326 (5958): 1397-1399.

Moran, XAG; Calvo-Diaz, A; Ducklow, HW. 2010. Total and phytoplankton mediated bottom-up control of bacterioplankton change with temperature in NE Atlantic shelf waters. Aquatic Microbial Ecology. 58: 229-239.

Olsen YS; Fox SE; Kinney EL; Teichberg M; Valiela I. 2010. Differences in urbanization and degree of marine influence are reflected in delta(13)C and delta(15)N of producers and consumers in seagrass habitats of Puerto Rico. Marine Environmental Research. 69 (3): 198-206.

Rabbitt, RD; Boyle, R; Highstein, SM. 2010. Mechanical amplification by hair cells in the semicircular canals. Proceedings of the National Academy of Sciences. E-first. 10.1073/pnas.0906765107

Rabbitt, RD; Breneman, KD; King, C; Yamauchi, AM; Boyle, R; Highstein, SM. 2009. Dynamic Displacement of Normal and Detached Semicircular Canal Cupula. JARO - Journal of the Association for Research in Otolaryngology. 10 (4): 497-509.

Rodriguez-Segui, SA; Bucior, I; Burger, MM; Errachid, A; Fernandez-Busquets, X. 2009. Application of the Quartz Crystal Microbalance to the Study of Multivalent Carbohydrate-Carbohydrate Adhesion. Sensor Letters. 7 (5): 782-787.

Schrenk, MO; Huber, JA; Edwards, KJ. 2010. Microbial Provinces in the Subseafloor. Annual Review of Marine Science. 2: 279-304. 10.1146/annurev-marine-120308-081000

Searchinger, TD Hamburg, SP; Melillo, J; Chameides, W; Havlik, P; Kammen, DM; Likens, GE; Lubowski, RN; Obersteiner, M; Oppenheimer, M; Robertson, GP; Schlesinger, WH; Tilman, GD. 2009. Fixing a Critical Climate Accounting Error. Science. 326 (5952): 527-528.

Searchinger, TD; Hamburg, SP; Melillo, J; Chameides, W; Havlik, P; Kammen, DM; Likens, GE; Obersteiner, M; Oppenheimer, M; Robertson, GP; Schlesinger, WH; Tilman, GD; Lubowski, R. 2010. Carbon Calculations to Consider--Response. Science. 327 (5967): 781-a.

Serres, MH; Kerr, ARW; McCormack, TJ; Riley, M. 2009. Evolution by leaps: gene duplication in bacteria. Biology Direct. 4: Art. No. 46.

Sloboda, RD. 2009. Posttranslational Protein Modifications in Cilia and Flagella. Methods in Cell Biology. 94 Chap 18: 347-363.

Souza-Egipsy, V; Gonzalez-Toril, E; Zettler, E; Amaral-Zettler, L; Aguilera, A; Amils, R. 2008. Prokaryotic community structure in algal photosynthetic biofilms from extreme acidic streams in Rio Tinto (Huelva, Spain). International Microbiology. 11 (4): 251-260.

Stoeck, T; Behnke, A; Christen, R; Amaral-Zettler, L; Rodriguez-Mora, MJ; Chistoserdov, A; Orsi, W; Edgcomb, VP. 2009. Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities. BMC Biology. 7: Art. No. 72.

Wernegreen, JJ; Kauppinen, SN; Brady, SG; Ward, PS. 2009. One nutritional symbiosis begat another: Phylogenetic evidence that the ant tribe Camponotini acquired Blochmannia by tending sap-feeding insects. BMC Evolutionary Biology. 9: Art. No. 292.

Wernegreen, JJ; Kauppinen, SN; Degnan, PH. 2009. Slip into something more functional: Selection maintains ancient frameshifts in homopolymeric sequences. Molecular Biology and Evolution. E-first. 10.1093/molbev/msp290

Witek, A; Herlyn, H; Ebersberger, I; Welch, DBM; Hankeln, T. 2009. Support for the monophyletic origin of Gnathifera from phylogenomics. Molecular Phylogenetics and Evolution. 53 (3): 1037-1041.

Yano, Y; Shaver, GR; Giblin, AE; Rastetter, EB. 2010. Depleted 15N in hydrolysable-N of arctic soils and its implication for mycorrhizal fungi–plant interaction. Biogeochemistry. 97 (2-3): 183-194.