Publications

June 15 - October 19, 2009

Akella, LM; Rejtar, T; Orazine, C; Hincapie, M; Hancock, WS. 2009. CLUE-TIPS, Clustering Methods for Pattern Analysis of LC_MS Data. Journal of Proteome Research. 8 (10): 4732-4742.

Baeta, A; Valiela, I; Rossi, F; Pinto, R; Richard, P; Niquil, N; Marques, JC. 2009. Eutrophication and trophic structure in response to the presence of the eelgrass Zostera noltii. Marine Biology. 156 (10): 2107-2120.

Berberian, G; Bollo, M; Montich, G; Roberts, G; DeGiorgis, JA; DiPolo, R; Beauge, L. 2009. A novel lipid binding protein is a factor required for MgATP stimulation of the squid nerve Na+/Ca2+ exchanger. Biochimica et Biophysica Acta - Biomembranes. 1788 (6): 1255-1262.

Bowen, JL; Crump, BC; Deegan, LA; Hobbie, JE. 2009. Increased supply of ambient nitrogen has minimal effect on salt marsh bacterial production. Limnology and Oceanography. 54 (3): 713-722.

Bowen, JL; Crump, BC; Deegan, LA; Hobbie, JE. 2009. Salt marsh sediment bacteria: their distribution and response to external nutrient inputs. ISME Journal. 3 (8): 924-934.

Boyle, R; Rabbitt, RD; Highstein, SM. 2009. Efferent Control of Hair Cell and Afferent Responses in the Semicircular Canals. Journal of Neurophysiology. 102 (3): 1513-1525.

Bradford, MA; Wallenstein, MD; Allison, SD; Treseder, KK; Frey, SD; Watts, BW; Davies, CA; Maddox, TR; Melillo, JM; Mohan, JE; Reynolds, JF. 2009. Decreased mass specific respiration under experimental warming is robust to the microbial biomass method employed. Ecology Letters. 12 (7): E15-E18.

Brangwynne, CP; Eckmann, CR; Courson, DS; Rybarska, A; Hoege, C; Gharakhani, J; Julicher, F; Hyman, AA. 2009. Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation. Science. 324 (5935): 1729-1732. 10.1126/science.1172046

Brito, DA; Rieder, CL. 2009. The Ability to Survive Mitosis in the Presence of Microtubule Poisons Differs Significantly Between Human Nontransformed (RPE-1) and Cancer (U2OS, HeLa) Cells. Cell Motility and the Cytoskeleton. 66 (8): 437-447.

Buchsbaum, RN; Deegan, LA; Horowitz, J; Garritt, RH; Giblin, AE; Ludlam, JP; Shull, DH. 2009. Effects of regular salt marsh haying on marsh plants, algae, invertebrates and birds at Plum Island Sound, Massachusetts. Wetlands Ecology and Management. 17 (5): 469-487.

Buresch, KC; Maxwell, MR; Cox, MR; Hanlon, RT. 2009. Temporal dynamics of mating and paternity in the squid Loligo pealeii. Marine Ecology Progress Series. 387 : 197-203.
Chaves, J; Neill, C; Germer, S; Neto, SG; Krusche, AV; Bonilla, AC; Elsenbeer, H. 2009. Nitrogen Transformations in Flowpaths Leading from Soils to Streams in Amazon Forest and Pasture. Ecosystems. 12 (6): 961-972.

Chiao, CC; Chubb, C; Buresch, K; Siemann, L; Hanlon, RT. 2009. The scaling effects of substrate texture on camouflage patterning in cuttlefish. Vision Research. 49 (13): 1647-1656.

Crook, RJ; Hanlon, RT; Basil, JA. 2009. Memory of Visual and Topographical Features Suggests Spatial Learning in Nautilus (Nautilus pompilius L.). Journal of Comparative Psychology. 123 (3): 264-274.

Depristo MA; Chang L; Vale RD; Khan SM; Lipkow K. 2009. Introducing Simulated Cellular Architecture to the Quantitative Analysis of Fluorescent Microscopy. Progress in Biophysics and Molecular Biology. E-first. 10.1016/j.pbiomolbio.2009.07.002

Drake, DC; Peterson, BJ; Galvan, KA; Deegan, LA; Hopkinson, C; Johnson, JM; Koop-Jakobsen, K; Lemay, LE; Picard, C. 2009. Salt marsh ecosystem biogeochemical responses to nutrient enrichment: a paired N-15 tracer study. Ecology. 90 (9): 2535-2546.

Dumont S; Mitchison TJ. 2009. Compression Regulates Mitotic Spindle Length by a Mechanochemical Switch at the Poles. Current Biology. 19 (13): 1086-1095.

Dumont, S; Mitchison, TJ. 2009. Force and Length in the Mitotic Spindle. Current Biology. 19 (17): R749-R761.

Fernandez-Busquets, X; Kornig, A; Bucior, I; Burger, MM; Anselmetti, D. 2009. Self-recognition and Ca2+-dependent Carbohydrate-carbohydrate Cell Adhesion Provide Clues to the Cambrian Explosion. Molecular Biology and Evolution. E-first. 10.1093/molbev/msp170

Gladyshev EA; Arkhipova IR. 2009. A single-copy IS5-like transposon in the genome of a bdelloid rotifer. Molecular Biology and Evolution. 26 (8):1921-1929.

Gladyshev EA; Arkhipova IR. 2009. Rotifer rDNA-Specific R9 Retrotransposable Elements Generate an Exceptionally Long Target Site Duplication upon Insertion. Gene. E-first. 10.1016/j.gene.2009.08.016

Gomez, MD; Nasi, E. 2009. Prolonged calcium influx after termination of light-induced calcium release in invertebrate photoreceptors. Journal of General Physiology. 134 (3): 177-189.

Grant, J; Tekle, YI; Anderson, OR; Patterson, DJ; Katz, LA. 2009. Multigene Evidence for the Placement of a Heterotrophic Amoeboid Lineage Leukarachnion sp among Photosynthetic Stramenopiles. Protist. 160 (3): 376-385.

Guay, CKH; Zhulidov, AV; Robarts, RD; Zhulidov, DA; Gurtovaya, TU; Holmes, RM; Headley, JV. 2009. Measurements of Cd, Cu, Pb and Zn in the lower reaches of major Eurasian arctic rivers using trace metal clean techniques . Environmental Pollution. E-first. 10.1016/j.envpol.2009.08.039

Hall, RO; Tank, JL; Sobota, DJ; Mulholland, PJ; O'Brien, JM; Dodds, WK; Webster, JR; Valett, HM; Poole, GC; Peterson, BJ; Meyer, JL; McDowell, WH; Johnson, SL; Hamilton, SK; Grimm, NB; Gregory, SV; Dahm, CN; Cooper, LW; Ashkenas, LR; Thomas, SM; Sheibley, RW; Potter, JD; Niederlehner, BR; Johnson, LT; Helton, AM; Crenshaw, CM; Burgin, AJ; Bernot, MJ; Beaulieu, JJ; Arango, CP. 2009. Nitrate removal in stream ecosystems measured by N-15 addition experiments: Total uptake. Limnology and Oceanography. 54 (3): 653-665.

Henson, JH; Cheung, D; Fried, CA; Shuster, CB; McClellan, MK; Voss, MK; Sheridan, JT; Oldenbourg, R. 2009. Structure and Dynamics of an Arp2/3 Complex-Independent Component of the Lamellipodial Actin Network. Cell Motility and the Cytoskeleton. 66 (9): 679-692.

Herron, PM; Stark, JM; Holt, C; Hooker, T; Cardon, ZG. 2009. Microbial growth efficiencies across a soil moisture gradient assessed using 13C-acetic acid vapor and 15N-ammonia gas. Soil Biology & Biochemistry. 41 (6): 1262-1269.

Ishmael, N; Hotopp, JCD; Ioannidis, P; Biber, S; Sakamoto, J; Siozios, S; Nene, V; Werren, J; Bourtzis, K; Bordenstein, SR; Tettelin, H. 2009. Extensive genomic diversity of closely related Wolbachia strains. Microbiology. 155 (7): 2211-2222.

Izumi, M; Sweeney, AM; DeMartini, D; Weaver, JC; Powers, ML; Tao, A; Silvas, TV; Kramer, RM; Crookes-Goodson, WJ; Mathger, LM; Naik, RR; Hanlon, RT; Morse, DE. 2009. Changes in reflectin protein phosphorylation are associated with dynamic iridescence in squid. Journal of the Royal Society Interface. E-first. 10.1098/rsif.2009.0299

Kenney, DE; Borisy, GG. 2009. Anecdotal, Historical and Critical Commentaries on Genetics Thomas Hunt Morgan at the Marine Biological Laboratory: Naturalist and Experimentalist. Genetics. 181 (3): 841-846.

Konstantinidis, KT; Serres, MH; Romine, MF; Rodrigues, JLM; Auchtung, J; McCue, LA; Lipton, MS; Obraztsova, A; Giometti, CS; Nealson, KH; Fredrickson, JK; Tiedje, JM. 2009. Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proceedings of the National Academy of Sciences. 106 (37): 15909-15914.

Kozul, CD; Ely, KH; Enelow, RI; Hamilton, JW. 2009. Low-Dose Arsenic Compromises the Immune Response to Influenza A Infection in Vivo. Environmental Health Perspectives. 117 (9): 1441-1447.

Kozul, CD; Hampton, TH; Davey, JC; Gosse, JA; Nomikos, AP; Eisenhauer, PL; Weiss, DJ; Thorpe, JE; Ihnat, MA; Hamilton, JW. 2009. Chronic Exposure to Arsenic in the Drinking Water Alters the Expression of Immune Response Genes in Mouse Lung. Environmental Health Perspectives. 117 (7): 1108-1115.

Lazarevic, V; Whiteson, K; Huse, S; Hernandez, D; Farinelli, L; Osteras, M; Schrenzel, J; Francois, P. 2009. Metagenomic study of the oral microbiota by Illumina high-throughput sequencing . Journal of Microbiological Methods. E-first. 10.1016/j.mimet.2009.09.012

Maresca TJ; Groen AC; Gatlin JC; Ohi R; Mitchison TJ; Salmon ED. 2009. Spindle Assembly in the Absence of a RanGTP Gradient Requires Localized CPC Activity. Current Biology. 19 (14): 1210-1215.

Mather, ME; Finn, JT; Ferry, KH; Deegan, LA; Nelson, GA. 2009. Use of non-natal estuaries by migratory striped bass (Morone saxatilis) in summer. Fishery Bulletin. 107 (3): 329-338.

Mathger, LM; Shashar, N; Hanlon, RT. 2009. Do cephalopods communicate using polarized light reflections from their skin?. Journal of Experimental Biology. 212 (14): 2133-2140.

Messerli, MA; Collis, LP; Smith, PJS. 2009. Fast Response, Noninvasive, Potentiometric Microelectrodes Resolve Single Potassium Channel Activity in the Diffusive Boundary Layer of a Single Cell. Electroanalysis. 21 (17-18): 1906-1913.

Miller, H; Norton, CN; Sarkar, IN. 2009. GenBank and PubMed: How connected are they? BMC Research Notes. 2: 101.

Morfini, GA; You, YM; Pollema, SL; Kaminska, A; Liu, K; Yoshioka, K; Bjorkblom, B; Coffey, ET; Bagnato, C; Han, D; Huang, CF; Banker, G; Pigino, G; Brady, ST. 2009. Pathogenic huntingtin inhibits fast axonal transport by activating JNK3 and phosphorylating kinesin. Nature Neuroscience. 12 (7): 864-871.

Mortazavi, B; Conte, MH; Chanton, JP; Smith, MC; Weber, JC; Crumsey, J; Ghashghaie, J. 2009. Does the C-13 of foliage-respired CO2 and biochemical pools reflect the C-13 of recently assimilated carbon?. Plant Cell and Environment. 32 (10): 1310-1323.

Mulholland, PJ; Hall, RO; Sobota, DJ; Dodds, WK; Findlay, SEG; Grimm, NB; Hamilton, SK; McDowell, WH; O'Brien, JM; Tank, JL; Ashkenas, LR; Cooper, LW; Dahm, CN; Gregory, SV; Johnson, SL; Meyer, JL; Peterson, BJ; Poole, GC; Valett, HM; Webster, JR; Arango, CP; Beaulieu, JJ; Bernot, MJ; Burgin, AJ; Crenshaw, CL; Helton, AM; Johnson, LT; Niederlehner, BR; Potter, JD; Sheibley, RW; Thomas, SM. 2009. Nitrate removal in stream ecosystems measured by N-15 addition experiments: Denitrification. Limnology and Oceanography. 54 (3): 666-680.

Muller, KJ; Tsechpenakis, G; Homma, R; Nicholls, JG; Cohen, LB; Eugenin, J. 2009. Optical analysis of circuitry for respiratory rhythm in isolated brainstem of foetal mice. Philosophical Transactions of the Royal Society B: Biological Sciences. 364 (1529): 2485-2491.

Nahum, LA; Goswami, S; Serres, MH. 2009. Protein Families Reflect Metabolic Diversity of Organisms and Provide Support for Functional Prediction. Physiological Genomics. 38 (3): 250-260.

Neill, C; Bezerra, MO; McHorney, R; O'Dea, CB. 2009. Distribution, species composition and management implications of seed banks in southern New England coastal plain ponds. Biological Conservation. 142 (7): 1350-1361.

Patterson, DJ. 2009. Seeing the Big Picture on Microbe Distribution. Science. 325 (5947): 1506-1507.

Rabbitt, RD; Clifford, S; Breneman, KD; Farrell, B; Brownell, WE. 2009. Power Efficiency of Outer Hair Cell Somatic Electromotility. PLoS Computational Biology. 5 (7): Art. No. e1000444.

Rocha, AV; Shaver, GR. 2009. Advantages of a two band EVI calculated from solar and photosynthetically active radiation fluxes. Agricultural and Forest Meteorology. 149 (9): 1560-1563.

Schober, JM; Cain, JM; Komarova, YA; Borisy, GG. 2009. Migration and actin protrusion in melanoma cells are regulated by EB1 protein. Cancer Letters. 284 (1): 30-36.

Serebryanaya, A; Shipunov, A. 2009. Morphological variation of plants on the uprising islands of northern Russia. Annales Botanici Fennici. 46 (2): 81-89.

Shimomura O. 2009. Discovery of Green Fluorescent Protein (GFP) (Nobel Lecture). Angewandte Chemie International . 48 (31): 5590-5602.

Sloboda, RD; Howard, L. 2009. Protein Methylation in Full Length Chlamydomonas Flagella. Cell Motility and the Cytoskeleton. 66 (8): 650-660.

Sokolov, AP; Stone, PH; Forest, CE; Prinn, R; Sarofim, MC; Webster, M; Paltsev, S; Schlosser, CA; Kicklighter, D; Dutkiewicz, S; Reilly, J; Wang, C; Felzer, B; Melillo, JM; Jacoby, HD. 2009. Probabilistic Forecast for Twenty-First-Century Climate Based on Uncertainties in Emissions (Without Policy) and Climate Parameters. Journal of Climate. 22 (19): 5175-5204.

Thessen, AE; Bowers, HA; Stoecker, DK. 2009. Intra- and interspecies differences in growth and toxicity of Pseudo-nitzschia while using different nitrogen sources. Harmful Algae. 8 (5): 792-810.

Vale, RD; Spudich, JA; Griffis, ER. 2009. Dynamics of myosin, microtubules, and Kinesin-6 at the cortex during cytokinesis in Drosophila S2 cells. Journal of Cell Biology. 186 (5): 727-738.

Wernegreen, JJ; Wheeler, DE. 2009. Remaining Flexible in Old Alliances: Functional Plasticity in Constrained Mutualisms. DNA and Cell Biology. 28 (8): 371-382.

Yang, Z; Kenny, AE; Brito, DA; Rieder, CL. 2009. Cells satisfy the mitotic checkpoint in Taxol, and do so faster in concentrations that stabilize syntelic attachments. Journal of Cell Biology. 186 (5): 675-684.

Yano, Y; Shaver, GR; Giblin, AE; Rastetter, EB. 2009. Depleted 15N in hydrolysable-N of arctic soils and its implication for mycorrhizal fungi-plant interaction . Biogeochemistry. E-first. 10.1007/s10533-009-9365-1