Publications

Barbosa, A; Mathger, LM; Buresch, KC; Kelly, J; Chubb, C; Chiao, CC; Hanlon, RT. 2008. Cuttlefish camouflage: The effects of substrate contrast and size in evoking uniform, mottle or disruptive body patterns. Vision Research. 48 (10): 1242-1253.

Bass, AH; Gilland, EH; Baker, R. 2008. Evolutionary Origins for Social Vocalization in a Vertebrate Hindbrain-Spinal Compartment. Science. 321 (5887): 417-421.

Battin, TJ; Kaplan, LA; Findlay, S; Hopkinson, CS; Marti, E; Packman, AI; Newbold, JD; Sabater, F. 2008. Biophysical controls on organic carbon fluxes in fluvial networks. Nature Geoscience. 1 (2): 95-100.

Berro, R; Pedati, C; Kehn-Hall, K; Wu, W; Klase, Z; Even, Y; Geneviere, AM; Ammosova, T; Nekhai, S; Kashanchi, F. 2008. CDK13: a new potential HIV-1 inhibitory factor regulating viral mRNA splicing. Journal of Virology. E-first. 10.1128/JVI.02543-07

Bowden, WB; Gooseff, MN; Balser, A; Green, A; Peterson, BJ; Bradford, J. 2008. Sediment and nutrient delivery from thermokarst features in the foothills of the North Slope, Alaska: Potential impacts on headwater stream ecosystems. Journal of Geophysical Research G: Biogeosciences. 113 (G2): Art. No. G02026.

Bret-Harte, MS; Mack, MC; Goldsmith, GR; Sloan, DB; DeMarco, J; Shaver, GR; Ray, PM; Biesinger, Z; Chapin, FS. 2008. Plant functional types do not predict biomass responses to removal and fertilization in Alaskan tussock tundra. Journal of Ecology. 96 (4): 713-726.

Brito, DA; Yang, Z; Rieder, CL. 2008. Microtubules do not promote mitotic slippage when the spindle assembly checkpoint cannot be satisfied. Journal of Cell Biology. E-first. 10.1083/jcb.200805072

Chappell, RL; Anastassov, I; Lugo, P; Ripps, H. 2008. Zinc-mediated feedback at the synaptic terminals of vertebrate photoreceptors. Experimental Eye Research. E-first. 10.1016/j.exer.2008.06.013

Chaves, J; Neill, C; Germer, S; Neto, SG; Krusche, A; Elsenbeer, H. 2008. Land management impacts on runoff sources in small Amazon watersheds. Hydrological Processes. 22 (12): 1766-1775.

Clay, JR; Paydarfar, D; Forger, DB. 2008. A simple modification of the Hodgkin and Huxley equations explains type 3 excitability in squid giant axons. Journal of the Royal Society Interface. E-first. 10.1098/rsif.2008.0166

Culbertson, JB; Valiela, I; Olsen, YS; Reddy,CM. 2008. Effect of field exposure to 38-year-old residual petroleum hydrocarbons on growth, condition index, and filtration rate of the ribbed mussel, Geukensia demissa. Environmental Pollution. 154 (2): 312-319.

Culbertson, JB; Valiela, I; Pickart, M; Peacock, EE; Reddy, CM. 2008. Long-term consequences of residual petroleum on salt marsh grass. Journal of Applied Ecology. 45 (4): 1284-1292.

Davidson, EA; Asner, GP; Stone, TA; Neill, C; Figueiredo, RO. 2008. Objective indicators of pasture degradation from spectral mixture analysis of Landsat imagery. Journal of Geophysical Research G: Biogeosciences. 113: Art. No. G00B03.

DeGiorgis, JA; Galbraith, JA; Dosemeci, A; Chen, XB; Reese, TS. 2006. Distribution of the scaffolding proteins PSD-95, PSD-93, and SAP97 in isolated PSDs. Brain Cell Biology. 35 (4-6): 239-250.

Desai, AR; Noormets, AN; Bolstad, PV; Chen, J; Cook, BD; Curtis, PV; Davis, KJ; Euskirchen, ES; Gough, C; Martin, JM; Ricciuto, DM; Schmid, HP; Su, H; Tang, J; Vogel, C; Wang, W. 2008. Influence of vegetation type, stand age and climate on carbon dioxide fluxes across the Upper Midwest, USA: Implications for regional scaling of carbon flux. Agricultural and Forest Meteorology. 148 (2): 288-308.

Dimond, J; Carrington, E. 2008. Symbiosis regulation in a facultatively symbiotic temperate coral: zooxanthellae division and expulsion. Coral Reefs. 27 (3): 601-604.

DiPolo, R; Beauge, L. 2008. In the squid axon Na+/Ca2+ exchanger the state of the Ca-i-regulatory site influences the affinities of the intra- and extracellular transport sites for Na+ and Ca2+. Pflugers Archiv European Journal of Physiology. 456 (3): 623-633.

Ewers, BE; Mackay, DS; Tang, J; Bolstad, P; Samanta, S. 2008. Intercomparison of sugar maple stand transpiration responses to environmental conditions from the western Great Lakes Region of the United States. Agricultural and Forest Meteorology. 148 (2): 231-246.

Fleeger, JW; Johnson, DS; Galvan, KA; Deegan, LA. 2008. Top-down and bottom-up control of infauna varies across the saltmarsh landscape. Journal of Experimental Marine Biology and Ecology. 357 (1): 20-34.

Fredrickson, JK; Romine, MF; Beliaev, AS; Auchtung, JM; Driscoll, ME; Gardner, TS; Nealson, KH; Osterman, AL; Pinchuk, G; Reed, JL; Rodionov, DA; Rodrigues, JLM; Saffarini, DA; Serres, MH; Spormann, AM; Zhulin, IB; Tiedje, JM. 2008. Towards environmental systems biology of Shewanella. Nature Reviews Microbiology. 6 (8): 592-603.

Garcia-Espana, A; Chung, PJ; Sarkar, IN; Stiner, E; Sun, TT; DeSalle, R. 2008. Appearance of new tetraspanin genes during vertebrate evolution. Genomics. 91 (4): 326-334.

Gardner, LR; Gaines, EF. 2008. A method for estimating pore water drainage from marsh soils using rainfall and well records. Estuarine, Coastal and Shelf Science. 79 (1): 51-58.

Geisz, HN; Dickhut, RM; Cochran, MA; Fraser, WR; Ducklow, HW. 2008. Melting glaciers: A probable source of DDT to the Antarctic marine ecosystem. Environmental Science & Technology. 42 (11): 3958-3962.

Gerlach, G; Hodgins-Davis A; Avolio C; Schunter C. 2008. Kin recognition in zebrafish: a 24-hour window for olfactory imprinting. Proceedings of the Royal Society of London B. 275 (1647): 2165-2170.

Gil, IS; Sheldon, W; Schmidt, T; Servilla, M; Aguilar, R; Gries, C; Gray, T; Field, D; Cole, J; Pan, JY; Palanisamy, G; Henshaw, D; O'Brien, M; Kinkel, L; McMahon, K; Kottmann, R; Amaral-Zettler, L; Hobbie, J; Goldstein, P; Guralnick, RP; Brunt, J; Michener, WK. 2008. Defining linkages between the GSC and NSF's LTER program: How the Ecological Metadata Language (EML) relates to GCDML and other outcomes. OMICS - A Journal of Integrative Biology. 12 (2): 151-156.

Gladyshev, EA; Meselson, M; Arkhipova, IR. 2008. Massive Horizontal Gene Transfer in Bdelloid Rotifers. Science. 320 (5880): 1210-1213.

Grimm, NB; Foster, D; Groffman, P; Grove, JM; Hopkinson, CS; Nadelhoffer, KJ; Pataki, DE; Peters, DPC. 2008. The changing landscape: ecosystem responses to urbanization and pollution across climatic and societal gradients. Frontiers in Ecology and the Environment. 6 (5): 264-272.

Groen, AC; Needleman, D; Brangwynne, C; Gradinaru, C; Fowler, B; Mazitschek, R; Mitchison, TJ. 2008. A novel small-molecule inhibitor reveals a possible role of kinesin-5 in anastral spindle-pole assembly. Journal of Cell Science. 121 (14): 2293-2300.

Halvorson HO; Duff J. 2008. Offshore aquaculture legislation designed to balance production and protection. Marine Pollution Bulletin. E-first. 10.1016/j.marpolbul.2008.05.016

Hanlon, RT; Forsythe, JW. 2008. Sexual cannibalism by Octopus cyanea on a Pacific coral reef. Marine and Freshwater Behaviour and Physiology. 41 (1): 19-28.

Harrington, JM; Chou, HT; Gutsmann, T; Gelhaus, C; Stahlberg, H; Leippe, M; Armstrong, PB. 2008. Membrane pore formation by pentraxin proteins from Limulus, the American horseshoe crab. Biochemical Journal. 413: 305-313.

Henson, JH; Fried, CA; McClellan, MK; Ader, J; Davis, JE; Oldenbourg, R; Simerly, CR. 2008. Bipolar, anastral spindle development in artificially activated sea urchin eggs. Developmental Dynamics. 237 (5): 1348-1358.

Hopkinson, CS; Lugo, AE; Alber, M; Covich, AP; Van Bloem, SJ. 2008. Forecasting effects of sea-level rise and windstorms on coastal and inland ecosystems. Frontiers in Ecology and the Environment. 6 (5): 255-263.

Inoue S. 2008. Microtubule Dynamics in Cell Division: Exploring Living Cells with Polarized Light Microscopy. Annual Review of Cell and Developmental Biology. E-first. 10.1146/annurev.cellbio.24.110707.175323

Mathger, LM; Chiao, CC; Barbosa, A; Hanlon, RT. 2008. Color matching on natural substrates in cuttlefish, Sepia officinalis. Journal of Comparative Physiology A: Sensory, Neural, and Behavioral Physiology. 194 (6): 577-585.

Monshausen, GB; Messerli, MA; Gilroy, S. 2008. Imaging of the Yellow Cameleon 3.6 Indicator Reveals that Elevations in Cytosolic Ca2+ Follow Oscillating Increases in Growth in Root Hairs of Arabidopsis thaliana. Plant Physiology. 147 (4): 1690-1698.

Monshausen, GB; Messerli, MA; Gilroy, S. 2008. Imaging of the Yellow Cameleon 3.6 Indicator Reveals that Elevations in Cytosolic Ca2+ Follow Oscillating Increases in Growth in Root Hairs of Arabidopsis thaliana. Plant Physiology. 147 (4): 1690-1698.

Pethig, R; Menachery, A; Heart, E; Sanger, RH; Smith, PJS. 2008. Dielectrophoretic assembly of insulinoma cells and fluorescent nanosensors into three-dimensional pseudo-islet constructs. IET Nanotechnology. 2 (2): 31-38.

Reznikoff WS. 2008. Transposon Tn5. Annual Review of Genetics. E-first. 10.1146/annurev.genet.42.110807.091656

Riley, M; Staley, JT; Danchin, A; Wang, TZ; Brettin, TS; Hauser, LJ; Land, ML; Thompson, LS. 2008. Genomics of an extreme psychrophile, Psychromonas ingrahamii. BMC Genomics. 9: Art. No. 210.

Salvador-Recatala V; Schneider T; Greenberg RM. 2008. Atypical properties of a conventional calcium channel beta subunit from the platyhelminth Schistosoma mansoni. BMC Physiology. 8: 6.

Santelli CM; Orcutt BN; Banning E; Bach W; Moyer CL; Sogin ML; Staudigel H; Edwards KJ. 2008. Abundance and diversity of microbial life in ocean crust. Nature. 453 (7195):653-6.

Sarkar, IN; Schenk, R; Norton, CN. 2008. Exploring historical trends using taxonomic name metadata. BMC Evolutionary Biology. 8: 144.

Schaus, TE; Borisy, GG. 2008. Performance of a population of independent filaments in lamellipodial protrusion. Biophysical Journal. 95 (3): 1393-1411.

Schneider, MJ; Ulland, M; Sloboda, RD. 2008. A Protein Methylation Pathway in Chlamydomonas Flagella Is Active During Flagellar Resorption. Molecular Biology of the Cell. E-first. 10.1091/mbc.E08-05-0470

Sokolov, AP; Kicklighter, DW; Melillo, JM; Felzer, BS; Schlosser, CA; Cronin, TW. 2008. Consequences of considering carbon-nitrogen interactions on the feedbacks between climate and the terrestrial carbon cycle. Journal of Climate. 21 (15): 3776-3796.

Tang, J.; Bolstad, PV; Desai, AR; Martin, JG; Cook, BD; Davis, KJ; Carey, EV. 2008. Ecosystem respiration and its components in an old-growth forest in the Great Lakes region of the United States. Agricultural and Forest Meteorology. 148 (2): 171-185.

Tekle, YI; Grant, J; Anderson, OR; Nerad, TA; Cole, JC; Patterson, DJ; Katz, LA. 2008. Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within 'Amoebozoa' upon removal of varying rate classes of SSU-rDNA. Molecular Phylogenetics and Evolution. 47 (1): 339-352.

Thessen, AE; Stoecker, DK. 2008. Distribution, abundance and domoic acid analysis of the toxic diatom genus Pseudo-nitzschia from the Chesapeake Bay. Estuaries and Coasts. 31 (4): 664-672.

Wollheim, WM; Vorosmarty, CJ; Bouwman, AF; Green, P; Harrison, J; Linder, E; Peterson, BJ; Seitzinger, SP; Syvitski, JPM. 2008. Global N removal by freshwater aquatic systems using a spatially distributed, within-basin approach. Global Biogeochemical Cycles. 22 (2): Art. No. GB2026.

Yang, Z; Loncarek, J; Khodjakov, A; Rieder, CL. 2008. Extra centrosomes and/or chromosomes prolong mitosis in human cells. Nature Cell Biology. 10 (6): 748-751.